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RUI XU |
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Education |
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08/2000~05/2006 |
University of Missouri-Rolla, Department of Electrical and Computer Engineering, Applied Computational Intelligence Laboratory, under Dr. Donald C. Wunsch II, Ph.D. |
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09/1997~06/2000 |
Sichuan University, Master of Engineering in Electrical Engineering |
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09/1993~07/1997 |
Huazhong
University of |
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| Research Interests | ||
| Computational Intelligence, Neural Networks, Statistical Learning, Machine Learning, Cluster Analysis, Pattern Classification, Optimization, Adaptive Critic Designs, Bioinformatics | ||
| Tutorial | ||
| Rui Xu and Donald C. Wunsch II, “Cluster analysis and swarm intelligence in clustering,” IEEE Swarm Intelligence Symposium, September 21, 2008. | ||
| Publications | ||
| Book | ||
| Rui Xu and Donald C. Wunsch II, “Clustering,” IEEE Press / Wiley, October, 2008. (Supplementary site) | ||
| Book Chapter | ||
| Rui Xu, Georgios C. Anagnostopoulos, and Donald C. Wunsch II, “A hybrid of neural classifier and swarm intelligence in multi-class cancer diagnosis with gene expression signatures,” In G. Fogel, D. Corne, and Y. Pan, Eds., Computational Intelligence in Bioinformatics, pp. 3-20, IEEE Press / Wiley, 2007. | ||
| Journal Papers | ||
| Rui Xu and Donald C. Wunsch II, “Survey of clustering algorithms,” IEEE Transactions on Neural Networks, vol. 16, no. 3, pp. 645-678, 2005. | ||
| Rui Xu, Georgios C. Anagnostopoulos, and Donald C. Wunsch II, “Multi-class cancer classification using semi-supervised ellipsoid ARTMAP and particle swarm optimization with gene expression data,” IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 4, no. 1, pp. 65-77, 2007. | ||
| Rui Xu, Ganesh K. Venayagamoorthy, and Donald C. Wunsch II “Modeling of gene regulatory networks with hybrid differential evolution and particle swarm optimization,” Neural Networks, vol. 20, pp. 917-927, 2007. | ||
| Rui Xu, Donald C. Wunsch II, and Ronald L. Frank “Inference of genetic regulatory networks with recurrent neural network models using particle swarm optimization,” IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 4, no. 4, pp. 681-692, 2007. | ||
| Rui Xu and Donald C. Wunsch II, “Recent advances in cluster analysis,” International Journal of Intelligent Computing and Cybernetics, vol. 1, no. 4, pp. 484-508, 2008. | ||
| Conference Papers | ||
| Rui Xu, Robert Woodley, and Donald C. Wunsch II, “A comparison of major machine learning methods in classification of anthrax time series from inhalation anthrax models,” 14th U.S. Army Conference on Applied Statistics, Lexington, VA, October, 2008. | ||
| Rui Xu, Robert Woodley, and Donald C. Wunsch II, “Default ARTMAP neural networks for classification of anthrax time series from inhalation anthrax models,” In Proceedings of the 2008 International Conference on Data Mining, Vol. 1, pp. 211-216, Las Vegas, July, 2008. | ||
| Rui Xu, Steven Damelin, Boaz Nadler, and Donald C. Wunsch II, “Clustering of high-dimensional gene expression data with feature filtering methods and diffusion maps,” In Proceedings of the International Conference on Biomedical Engineering and Informatics, Vol. 1, pp. 245-249, Sanya, China, May, 2008. | ||
| Rui Xu, Steven Damelin, and Donald C. Wunsch II, “Clustering of cancer tissues using diffusion maps and fuzzy ART with gene expression data,” In Proceedings of World Congress on Computational Intelligence 2008, pp. 183-188, Hong Kong, China, June, 2008 | ||
| Rui Xu, Robert Woodley, and Donald C. Wunsch II, “Identification of anthrax time series from inhalation anthrax models using default ARTMAP,” 12th International Conference on Cognitive and Neural Systems, Boston, May, 2008. | ||
| Rui Xu, Steven Damelin, and Donald C. Wunsch II, “Applications of diffusion maps in gene expression data-based cancer diagnosis analysis,” In Proceedings of the 29th Annual International Conference of IEEE Engineering in Medicine and Biology Society, Lyon, France, pp. 4613-4616, August, 2007. | ||
| Rui Xu and Donald C. Wunsch II, “Computational intelligence in clustering algorithms, with applications,” In A. Iske and J. Levesley, Eds., Algorithms for Approximation, Proceedings of 5th International Conference, Chester, England, UK, Springer, Heidelberg, pp. 31-50, 2007. | ||
| Rui Xu, Ganesh K. Venayagamoorthy, and Donald C. Wunsch II, “A study of particle swarm optimization in gene regulatory networks inference,” In J. Wang, Z. Yi, J. Zurada, B. Lu, and H. Yin, Eds., Advances in Neural Networks - ISNN 2006: Third International Symposium on Neural Networks, ISNN 2006, Chengdu, China, pp. 648-653, Springer Berlin / Heidelberg, 2006. | ||
| Rui Xu, Xindi Cai, and Donald C. Wunsch II, “Gene expression data for DLBCL cancer survival prediction with a combination of machine learning technologies,” In Proceeding of the 27th Annual International Conference of IEEE Engineering in Medicine and Biology Society, pp. 894-897, Shanghai, China, September, 2005. | ||
| Rui Xu and Donald C. Wunsch II, “Gene regulatory networks inference with recurrent neural network models,” In Proceedings of International Joint Conference on Neural Networks 2005, vol. 1, pp. 286-291, Montreal, Quebec, Canada, August, 2005. | ||
| Rui Xu, Xiao Hu, and Donald C. Wunsch II, “Inference of genetic regulatory networks with recurrent neural network models,” In Proceedings of the 26th Annual International Conference of IEEE Engineering in Medicine and Biology Society, vol. 2, pp. 2905-2908, September, 2004. | ||
| Rui Xu, Georgios C. Anagnostopoulos, and Donald C. Wunsch II, “Multi-class cancer classification by semi-supervised ellipsoid ARTMAP with gene expression data,” In Proceedings of the 26th Annual International Conference of IEEE Engineering in Medicine and Biology Society, vol. 1, pp. 188-191, September, 2004. | ||
| Rui Xu, Xiao Hu, and Donald C. Wunsch II, “Inference of genetic regulatory networks from time series gene expression data,” In Proceedings of International Joint Conference on Neural Networks 2004, vol. 2, pp. 1215-1220, Budapest, Hungary, July, 2004. | ||
| Rui Xu, Donald C. Wunsch II, “Application of ellipsoid ART/ARTMAP in analyzing gene expression data,” 8th International Conference on Cognitive and Neural Systems, Boston, 2004. | ||
| Rui Xu and Donald C. Wunsch II, “Probabilistic neural networks for multi-class tissue classification with gene expression data,” In Proceedings of International Joint Conference on Neural Networks 2003, vol. 3, pp. 1696-1701, Portland, Oregon, July 2003. | ||
| Rui Xu, Georgios C. Anagnostopoulos and Donald C. Wunsch II, “Tissue classification through analysis of gene expression data using a new family of ART architectures,” In Proceedings of International Joint Conference on Neural Networks 2002, vol. 1, pp. 300-304, Honolulu, Hawaii, May 2002. | ||
| Rui Xu and Donald C. Wunsch II, “Analysis of gene expression data by ellipsoid ART and ARTMAP,” 3rd Georgia Tech-Emory International Conference on Bioinformatics, Atlanta, 2001. | ||
| Xindi Cai, Rui Xu, V. A. Samaranayake, and Donald C. Wunsch II, “A statistical solution to a text decoding challenge problem,” In Proceedings of International Joint Conference on Neural Networks 2001, vol. 2, pp. 1043 - 1046, Washington DC, July 2001. | ||
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Professional Experience |
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Teaching Assistant |
March, 1999–June, 1999 Department of Automation, Sichuan University |
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Research Assistant |
September, 1998– May, 1999 Department of Automation, Sichuan University |
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| Research Assistant | August, 2000 – December, 2005 Applied Computational Intelligence Laboratory, University of Missouri-Rolla | |
| Research Associate | January, 2006 – present Applied Computational Intelligence Laboratory, Missouri University of Science & Technology | |
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Professional Membership and Activities |
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| Institute of Electrical and Electronics Engineers (IEEE), Member | ||
| Sigma Xi, Full Member | ||
| IEEE Computational Intelligence Society, Member | ||
| Review and program committee for IJCNN02-08, ISNN08-09, SIS08, CIBCB07-08, CEC08-09, ICSAC08, PRIB07, etc. | ||
| Reviewer for IEEE Transactions on Neural Networks, IEEE Transactions on Evolutionary Computation, Pattern Recognition, Bioinformatics, Bioinformatics and Biology Insights, etc. | ||
| Session Chair of IEEE Swarm Intelligence Symposium, 2008 | ||
| DOE travel grant for The Third Georgia Tech-Emory International Conference on Bioinformatics | ||
| IEEE Neural Network Society travel grant for the 2002 International Joint Conference on Neural Networks | ||
| Scholar travel fellowship for the Eighth International Conference on Cognitive and Neural Systems, 2004 | ||
| IEEE Computational Intelligence Society travel grant for the 2005 International Joint Conference on Neural Networks | ||
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| Contact me | ||
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Office Address |
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Applied Computational Intelligence Laboratory |
Email address: rxu@mst.edu |
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Department of Electrical & Computer Engineering |
Homepage: http://www.mst.edu/~rxu/ |
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Missouri University of Science & Technology |
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| Rolla, MO 65409 | ||
| (573)-341-6811 |
Last updated on 09/27/2008